Tag Archives: Neanderthal

Hybridisation in human evolution

A press release from the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany, announces the completion of a genome from a third Neanderthal individual and its release to other anthropological researchers. Using a toe bone found in the same Siberian cave as the finger bone used to reconstruct the genome of a Denisovan, the new analysis is by far the most precise obtained from Neanderthal remains. For the first time it is possible to distinguish copies of the genes inherited by the individual from both parents. In that regard its quality is as good or even better than genomes from present-day humans.  Svante Pääbo, lead scientist at the Institute, hopes that the team will now be able to more deeply penetrate aspects of the history of Neanderthals and Denisovans – the Denisovan genome is of a similar quality – and of the genetic divergence of anatomically modern humans from the common ancestors of all three.

The data release coincided with a review of genetic evidence for interbreeding between early Homo sapiens and other species (Hammer, M.F. 2013. Human hybrids. Scientific American, v. 308 (May 2013), p. 52-57). Michael Hammer of the University of Arizona begins by comparing the main hypotheses for the evolution of fully modern humans. The Out-of-Africa model involves modern people of African origin completely replacing all other human species in and outside Africa. Multi-regional evolution posits archaic populations  originally living in and outside Africa being  gradually assimilated by migration and interbreeding that transferred modern traits everywhere yet retained some regionally distinct features of the archaic groups.

1: 1=Homo sapiens 2=Neanderthals 3=Early Homin...

Modern human migration out of and within Africa relative to the domains of coeval archaic humans 1 = modern humans 2 = Neanderthals 3 = other archaic humans (credit: Wikipedia)

The first model clearly has to be modified as evidence accumulates for some degree of hybridisation with archaic groups outside Africa. The second of the two pre-genome ideas seemed to be rendered obsolete by the DNA evidence for significant interbreeding between early immigrants from Africa and Eurasian and Asian populations of earlier archaic migrants – Neanderthals and Denisovans respectively – whereas modern Africans show no sign of recent contact with these archaic groups. However, not all regions of the genome have been examined for signs of more universal hybridisation.

Hammer cites a 2005 study of DNA sequences in a non-functional region of the X chromosome that pointed towards its origin as far back as 1.5 Ma and entry into the modern genome in East Asia from a species of Homo that had entered the region far earlier than Neanderthals or Denisovans (perhaps Homo erectus). There is similar evidence for fertile interbreeding of modern humans with an archaic species in Africa. Together with the evidence for a degree of Neanderthal-modern interbreeding in the Middle East around 80 to 50 ka, some of whose descendants destined to reach Australasia interbred with Denisovans, probably further to the east, such reports clearly indicate a significant role for hybridisation.

As the source of all human species, Africa had the greatest chance of several of them living close-by at any one time and thus of interbreeding. Hammer and colleagues at the University of California, San Francisco report a 2 percent contribution of genetic material in three sub-Saharan modern populations from archaic humans split-off from them around 700 ka and recombined in moderns at about 35 ka. By chance Albert Perry, an African-American who chose to be genetically profiled commercially, found himself the possessor of a never-before recorded DNA variant in his Y chromosome. It was shown to have branched off the modern genetic tree almost 350 ka ago. His overall Y-chromosome DNA match was with men who live in a small area of Cameroon. Further complicating matters is evidence for a small Neanderthal component in the DNA of Maasai people living in East Africa.

Though still unpublished, fossil evidence unearthed in Nigeria and the Democratic Republic of the Congo of humans with cranial characteristics that bear both modern and archaic features. These are not early moderns but date back to about 13 ka. They imply either that there were still archaic humans cohabiting with moderns recently, or regular interbreeding had been going on for millennia further back in time. Hybridisation is emerging as a complicating factor in human evolution, and possibly one of great importance. It may have conferred immunity to pathogens endemic in new territories entered by modern migrants from Africa, and who is to say what other aspects of fitness? The once favoured Replacement model is looking shaky and will be refuted if more evidence emerges of viable hybridisation between various archaic humans and new arrivals from Africa. The African modern genetic pattern may dominate but the ‘old ones’ maintain a genetic foothold, despite their extinction. It always has to be borne in mind that all the modern genetic lines that emerged from Africa since about 100 ka probably did not survive either: those that did may have done so because they combined with significant traces of humans of much greater antiquity and owe their continuity to that legacy.

Disputes in the cavern

If Ignatius Loyola been a child of the late 20th century, it is quite likely that he would have chosen palaeoanthropology as a career rather than theology, seeing as he was so predisposed to casuistry. When I innocently asked a vertebrate palaeontologist who specialized in the Pliocene and Pleistocene Epochs why it was that students of hominins were so prone to controversy, his answer was revealing: ‘They don’t have many fossils’. One place where there are lots of hominin fossils, in fact the largest known sample of them, is the Atapuerca cavern in northern Spain. At the deepest level of the cave system there is a veritable charnel house containing the remains of at least 28 individuals. Because there are bones from all parts of the human anatomy, some have suggested that the cache is one of deliberate burial, but there is a disturbing dearth of the smaller bones of feet and hands. Consequently, other voices claim that the bodies were washed in by floods, losing extremities en route – though that view would be easily tested using other signs of trauma on large bones. Yet that is a minor quibble compared with one that is developing around the age of the boneyard and the taxonomy of the cadavers in it (http://www.guardian.co.uk/science/2012/jun/10/fossil-dating-row-sima-huesos-spain).

Head of Homo heidelbergensis (Replika), Sencke...

Head of Homo heidelbergensis , Senckenberg Museum, Frankfurt am Main, Germany (Photo credit: Wikipedia)

The Spanish team responsible for the evolutionary wealth in the entire Atapuerca cave complex, which ranges from almost a million years ago to recent times, assigned the Sima de los Huesos (Pit of Bones) fossils to Homo heidelbergensis. In fact about 90% of all H. heidelbergensis remains are from Atapuerca, so any anatomical dispute over these specimens is a threat to the status of the species itself. One leading authority who does dispute this assignment is Chris Stringer of the UK Natural History Museum, who claims that many of the heads have teeth and jaws with shapes that fall within the range of Neanderthals – supposedly descended from H. heidelbergensis. The age of the deposit is the focus of debate. Were it to be around 400 ka or younger, as early attempts at dating suggested, then the fossils might well be those of Neanderthals for that is early in the range of that species as determined by ‘molecular-clock’ studies of Neanderthal DNA. However, the material most likely to yield a good radiometric age is carbonate speleothem, the stuff of stalactites and stalagmites though more commonly a matrix that binds together old cave detritus. The fossils are undoubtedly far older than the maximum age that can be achieved using the well known radiocarbon method (<60 ka), but speleothem lends itself to a precise dating technique based on the decay series of uranium isotopes. In the case of Sima de los Huesos, the fossils lie in a clay breccia overlain by a layer of speleothem, which has yielded a U-series age of around 600 Ma (Bischoff, J.L. et al. 2007. High-resolution U-series dates from the Sima de los Huesos hominids yields 600 kyrs: implications for the evolution of the early Neanderthal lineage. Journal of Archaeological Science, v. 34, p. 763-770).

The ‘bone breccia’ in Sima de los Huesos, Atapuerca caverns Spain (from Bischoff, J.L. et al. 2007)

English: Skhul V

Neanderthal head from Israel (Wikipedia)

Stringer argues that the hominins’ anatomy is so like that of Neanderthals that, somehow, the radiometric age must be wrong – i.e. “too old” – perhaps because the speleothem is in fact from a 600 ka block that fell onto the fossils after they had accumulated. His view is that they are Neanderthals descended from H. heidelbergensis living in the earlier Pleistocene and which was the common ancestor of both Neanderthals and anatomically modern humans. Bischoff et al. consider the Sima de los Huesos hominids to be ‘at the very beginnings of the Neanderthal evolutionary lineage’, which seems to me to be a reasonable deduction from both stratigraphic and anatomical data. To demand that they must be at least 200 ka younger, apparently on the basis of an estimate of Neanderthal origination from DNA data seems less reasonable. The appearance of Stringer’s detailed arguments  in Evolutionary Anthropology (v. 21(3)) is eagerly awaited, following the Observer’s take on his position.

Another area in which controversy is brewing – and has been for decades – is that of the origin of human artistic culture. One of the gem-boxes of early art is the Geissenclösterle (monastery of the goats) cavern in southern Germany, in which have been found various figurines made of bird bone and ivory, including a celebrated lion-man theriomorph, highly exaggerated female figures, flutes and beads. They belong to the Aurignacian culture brought by the earliest anatomically modern Europeans who diffused westwards along the Danube from the near-East as early as 45 ka ago. The layer containing the artifacts was originally dated at about 35 ka, but new radiocarbon techniques have been tried on bone with cut marks, among other materials (Higham, T. et al. 2012. Testing models for the beginnings of the Aurignacian and the advent of art and music: the radiocarbon chronology of Geissenclösterle. Journal of Human Evolution, v. 62, p. 664-676 doi:10.1016/j.jhevol.2012.03.003) and found to yield a much older age of 42.5 ka, close to the oldest European date for modern human occupation 43-45 ka for the stratigraphically older Uluzzian tool industry.

Lion_man_photo

Lion-man sculpture from Geissenclösterle ( J. Duckek Wikipedia)

The date is also considerably earlier than the demise of the Neanderthals and raises the issue of modern-Neanderthal contacts. Indeed the layer below that assigned to Aurignacian contains tools made by Neanderthals, whose age is statistically indistinguishable from the later occupation level. The Chatelperronian tool industry, which closely resembles the Aurignacian but is ascribed to Neanderthals, is supposed to be around 40 ka old, but the advanced radiocarbon technique that yielded much older ages for Geissenclösterle apparently has not yet been deployed on this culture. On the basis of limited age data, it does seem likely that Neanderthals adopted the new technology after they encountered it. The Aurignacian artistic products are vastly more advanced than any found at older sites in Africa.

Original Venus from Hohle Fels, mammoth ivory,...

Aurignacian female figurine from near Geissenclösterle..(Silosarg: Wikipedia)

In the context of the debate about modern human and Neanderthal cognitive abilities, which suggests the former were altogether smarter and more creative, there is an unvoiced or at least unheeded argument. Whether or not Neanderthals originated artifacts that were ‘modern’ for their time or copied them is not as important as the fact that this group, previously isolated for up to 400 millennia, were able to appreciate and learn these novelties. That is much the same as people living today, in Australia for instance, a couple of generations from hunter-gatherer origins, working on production lines, piloting aircraft, social networking and creating world-class abstract art. What did they, and the Aurignacians, produce from other materials that have not survived decay; ditto for any pre-45 ka humans? Another point rarely raised, but surely valid, is that previous people may not have felt any need to produce art in forms that survive for tens or hundreds of millennia. Forty-odd thousand years ago, climate was undergoing rapid ups and downs of temperature and humidity in the run-up to the last glacial maximum. Conditions at mid-latitudes would have been much more changeable than those of the tropics. Both anatomically modern humans and Neanderthals faced the same attendant ecological changes, and as co-occupants of southern Europe they faced each other as rivals for available resources. Finally, Aurignacians hailed from the east, also Neanderthal territory and severely affected by rapid climate change from around 80 ka; so did they bring with them a culture formed elsewhere? Europe concentrates palaeoanthropologists and their endeavours, while much of the planet to which humans diffused from Africa – and Africa itself – are grossly under-investigated by comparison: ideas will undoubtedly change drastically as these areas get the attention they deserve.

Controversy is not a problem. Indeed, with imperfect, inadequate or ambiguous data it is unavoidable, and heated disputes spur the search for more information that can help resolve ideas or change them. What cannot be sidestepped is the potential for havoc that may arise with new and improved methods. In both cases outlined here radiometric dates have thrown the proverbial spanner into the works. The method used in the Geissenclösterle cavern was designed to remove younger contaminating material from samples for radiocarbon dating and inevitably tends to push 14C dates further back in time. By removing a source of inaccuracy it highlights the inadequacies of dates obtained by earlier approaches on which a great deal of current archaeological thinking relies. Just how much younger contamination is present in a sample only emerges after the improved dating: it may be absent but an be substantial. So, until materials dated by earlier radiocarbon methods are re-run using the new approach neither their absolute ages nor their relative sequence in time can be considered reliable.

Español: Réplica del techo de la cueva de Alta...

Art on the walls of Altamira Cave, northern Spoain, including both older abstract works and younger figurative depictions of prey animals (Photo credit: Wikipedia)

Results from just such an advance in radiometric dating of cave deposits in northern Spain will really cause a stir, when they sink in (Pike, A.W.G. and 10 others 2012. U-series dating of Paleolithic art in 11 caves in Spain. Science, v. 336, p. 1409-1413). The U-series method used at the University of Bristol by the joint British-Spanish collaborators dates calcite deposits on painted cave walls, including those at the famous Altamira site. This  ‘flowstone’ may underlie artwork or may have grown over it after its completion, giving maximum or minimum ages for the painting, respectively. If a work has flowstone underneath and as a coating, dating potentially ‘brackets’ a possible age range. The superb figurative depictions of various prey animals, such as bison in Altamira cave, turn out to have been painted at around 18 ka, during the last glacial maximum. However a lot of the art there is abstract, such as hands picked out by red pigment presumably sprayed onto the wall from the artist’s mouth, various stippled discs and dots. Many of the abstracts are beneath flowstone that is around twice as old as the more familiar objects and range in age from 34 to 41 ka, thereby being close in time with the Geissenclösterle materials. Like them, their ages may coincide with the arrival of the earliest anatomically modern Europeans, but they are also towards the end of the period when Neanderthals were still present in much of Europe, including northern Spain. It cannot be ruled out therefore that the earliest paintings were Neanderthal symbolic art.

Snippets on human evolution

Image copyright held by author, Chris Henshilw...

Artifacts from the Blombos Cave, South Africa, including deliberately etched block of hematite Image by Chris Henshilwood via Wikipedia

The news that most humans outside of Africa carry fragments of DNA that match with those of Neanderthals and the mysterious Denisovan archaic humans ( see Yes, it seems that they did… and Other rich hominin pickings in the May 2010 issue of EPN) has entered into popular culture; or soon will have! Similar dalliances with the ‘older folk’ seem also to have occurred among those humans who remained in Africa (Hammer, M.F. et al. 2011. Genetic evidence for archaic admixture in Africa. Proceedings of the National Academy of Sciences, v. 108, p. 15123-15128). The DNA of three groups in West Africa who maintain a hunter-gatherer lifestyles show regions that are not involved in coding for proteins that differ from the African norm. This suggests mating with an entirely separate and unknown group of hominins – probably archaic forms of humans – that produced fertile offspring, probably around 35 thousand years ago. The find spurred re-evaluation of bones with a mix of archaic and modern features that were discovered in a Nigerian cave in the 1960s (Harvati, K. et al. 2011. The Later Stone Age Calvaria from Iwo Eleru, Nigeria: Morphology and Chronology. PLoS ONE, v.  6: e24024. doi:10.1371/journal.pone.0024024). The study confirms that the skulls are outside the fully modern human range, but display a close similarity with Neanderthal and H. erectus. The big surprise is that U-Th dating suggests they are quite recent, around 16 ka. The stage seems set for nor only a burst of exploration for human remains of less antiquity than early hominins but a ‘paradigm shift’ in our view of what constitutes a human species.

See also: Gibbons, A. 2011, African data bolster new view of modern human origins. Science, v. 334, p. 167.

Another interesting link with archaic humans who had the closest of relationships with some of our ancestors is that their union may have bolstered the resistance of migrants from Africa to Eurasian pathogens (Abi-Rached, L. and 22 others 2011. The shaping of modern human immune systems by multiregional admixture with archaic humans. Science, v. 334, p. 89-94). The focus was on the human leucocyte antigen (HLA) group that is a vital part of our immune system in the form of ‘killer cells’. Part of modern Eurasian DNA that codes for the group (HLA-B*73 allele) appears in the Neanderthal and Denisovan genomes; indeed more than half the HLA alleles of modern Eurasians may have originated in this way, and have also been introduced into Africans subsequently.

Also at the front line of genomic research into human origins, DNA sequenced from a lock of hair given to an Edwardian anthropologist by a native Australian turns out to have an extreme antiquity compared with that of other Eurasian people descended from African migrants (Rasmussen, M. and 57 others. An aboriginal Australian genome reveals separate human dispersals into Asia. Science, v. 334, p. 94-98). The unique aspects of the Australian genome signify separation of a group of individuals from the main African population around 62-75 thousand years ago; significantly earlier than and different from ‘run of the mill’ migrants from whom modern Asians arose at between 25 to 38 ka. There is little doubt that native Australians are descended from the pioneers who first diffused from Africa either by crossing the Straits of Bab el Mandab or taking another route and they moved more speedily across southern Asia than other waves made possible by climate change and sea-level falls following the Eemian interglacial of 133-115 ka.

Despite the lingering Eurocentrist view that somehow fully modern human consciousness sprang into being at the time the famous French and Spanish cave art was painted, around 30 ka, increasing evidence points to an African origin for a sense of aesthetics and the ability to express it. The latest is the discovery of a 100 ka ‘paint box’ in a South African coastal cave (Henshilwood, C.S. et al. 2011. A 100,000-year-old ochre-processing workshop at Blombos Cave, South Africa. Science, v. 334, p. 219-223). The material consists of two large abalone shells containing traces of red and orange ochre, together with a hammer stone and grinder with adhering ochre, and fat-rich bones which ground-up would have produced a binder for the ochre. No art occurs in the cave and it might be supposed that the pigments were intended for face- or body adornment.

Hominin round-up

The skull of Australopithecus africanus so-cal...

Australopithecus africanus from Sterkfontein cave, South Africa. Image via Wikipedia

Strontium isotopes and australopithecine habits

Viewers of Channel 4’s Time Team will be used to seeing eating habits and places of habitation being derived from strontium isotopic analyses of the teeth of modern humans found by archaeologists. The methods enabled scientists to work out where ‘Ötzi the Iceman’, whose mummified remains were found on the alpine border of Austria and Italy, hailed from: it was most likely to have been the South Tyrol province of Italy. Other isotopes (nitrogen and carbon) shows that he was predominantly vegetarian; i.e. he was neither a hunter, nor an especially privileged member of Tyrolean Chalcolithic society.

The same methods offer insights into the life styles of far earlier hominins and has recently been used on teeth of australopithecines (Australopithecus africanus and Paranthropus robustus) found in the famous Sterkfontein and Swartkrans caves South Africa (Copeland, S.R. et al. 2011. Strontium isotope evidence for landscape use by early hominins. Nature, v. 474, p. 76-78). The caves formed in Precambrian dolomites and it was expected that all the teeth would show signs that the individuals from whose jaws they were collected lived their entire lives in a small tract of dolomites (~30 km2) surrounding the caves. For large individuals that was indeed the case, but teeth from smaller fossils show 87Sr/86Sr ratios that are significantly different from those characteristic of local rocks and soils. That suggests the smaller individuals came from further afield than the restricted tract of carbonate strata. Although pelvic remains are normally the best guide to the sex of primate fossils, they are less frequently found than those of crania and dentition. Size variations of adults in a primate species, however, may indicate sexual dimorphism – larger males than females – and this is well-accepted for australopithecines. The implication is that for both species males had small home ranges on the dolomites, or that they preferred that tract. Yet females had dispersed from their parental groups and moved into the area.

Most living primates do not show this kind of sexual dispersion pattern, termed male philopatry,  it being common among modern humans, chimpanzees and bonobos. In the case of the australopithecines that were being studied, both were diminutive creatures living in open savannah with risks of predation from a range of large carnivores. Perhaps the bands living in the dolomite area had better refuges in caves than those elsewhere, and therefore able to attract females.

Arctic Neanderthals

Mousterian Point

A Mousterian stone point, possibly for a spear. Image via Wikipedia

The last Neanderthals known to have been alive were close to the southernmost limit of Europe, in caves on the Rock of Gibraltar at about 24 ka, shortly before the last glacial maximum. Their remains have been found in a >6000 km west-east zone at temperate latitudes, south of 50°N, which extended from western Europe to the Denisova cave in the Altai republic of Russia (50°N, 87°E). This suggests that they subsisted in deciduous woodland and temperate steppe, diffusing southwards as conditions cooled during 2 or 3 past glacial periods. Consequently, sites at higher northern latitudes that preserve only cultural remains – Palaeolithic tools – have hitherto been regarded as signs of fully modern human occupation; it takes considerable skill to distinguish Neanderthal from early modern human artefacts, which are very similar during the time of overlapping occupation (~40-30 ka). A site in northern Siberia at Byzovaya  in the Polar Urals, close to the Arctic circle, is a case in point. A French, Norwegian and Russian team of archaeologists re-examined the site (Slimak, L. et al. 2011. Late Mousterian persistence near the Arctic Circle. Science, v. 332, p. 841-845) and dated it to between 31-34 ka. They also analysed a suite of stone tools, finding that they are directly comparable with Mousterian (Middle Palaeolithic) implements from western Europe rather than products of modern human’s industry of similar antiquity. At that time high-latitude climate was well on its way to frigid, dry conditions (there were no substantial continental ice sheets in northern Russia). The animal remains found at the site were dominated by those of mammoth, with minor proportions of other cold-steppe large mammals, such as woolly rhino, musk ox, horse and bear.

A notable feature of the results is that they suggest that Neanderthals, or others people with a Mousterian culture, were occupying this bleak terrain at roughly the same time as modern humans, who left considerably richer suites of artefacts, including tools, ornaments and figurines carved from bone and ivory, but were after more or less the same prey species. Both groups clearly were able to cope with and thrive on the harsh conditions, until recently only within the scope of highly specialised cultures such as the Innuit and original Siberian peoples. The dating shows that whoever produced and used the Mousterian tools not only shared the terrane with modern humans, but lingered until well after the previously accepted time (~37 ka) of the Neanderthals’ demise except for a few refuges in the Iberian Peninsula and Balkans. Despite the occupation of northern Siberia by different cultural groups, until their bones are found who they were is not certain. Denisova Cave showed that Neanderthals and the genetically different Denisovans co-occupied temperate central Siberia (see Other rich hominin pickings in the May 2010 issue of EPN) so there are currently two options.